LeafClass Module


Uses


Variables

Type Visibility Attributes Name Initial
integer(kind=int32), public :: PF_SOYBEAN_CV = 100

Interfaces

public interface operator(//)

  • public function append_leaf_object_vector(arg1, arg2) result(ret)

    Arguments

    Type IntentOptional Attributes Name
    type(Leaf_), intent(in), allocatable :: arg1(:)
    type(Leaf_), intent(in), allocatable :: arg2(:)

    Return Value type(Leaf_), allocatable, (:)


Derived Types

type, public ::  Leaf_

Components

Type Visibility Attributes Name Initial
type(FEMDomain_), public :: FEMDomain
real(kind=real64), public, allocatable :: LeafSurfaceNode2D(:,:)
real(kind=real64), public :: ShapeFactor
real(kind=real64), public :: Thickness
real(kind=real64), public :: length
real(kind=real64), public :: width
real(kind=real64), public :: center(3)
real(kind=real64), public :: MaxThickness
real(kind=real64), public :: Maxlength
real(kind=real64), public :: Maxwidth
real(kind=real64), public :: center_bottom(3)
real(kind=real64), public :: center_top(3)
real(kind=real64), public :: outer_normal_bottom(3)
real(kind=real64), public :: outer_normal_top(3)
real(kind=real64), public, allocatable :: source(:)
real(kind=real64), public, allocatable :: ppfd(:)
real(kind=real64), public, allocatable :: A(:)
integer(kind=int32), public :: Division
type(Leaf_), public, pointer :: pleaf
type(Peti_), public, pointer :: pPeti
real(kind=real64), public :: rot_x = 0.0d0
real(kind=real64), public :: rot_y = 0.0d0
real(kind=real64), public :: rot_z = 0.0d0
real(kind=real64), public :: disp_x = 0.0d0
real(kind=real64), public :: disp_y = 0.0d0
real(kind=real64), public :: disp_z = 0.0d0
real(kind=real64), public :: shaperatio = 0.30d0
real(kind=real64), public :: minwidth
real(kind=real64), public :: minlength
real(kind=real64), public :: MinThickness
integer(kind=int32), public :: LeafID = -1
logical, public :: already_grown = .false.
integer(kind=int32), public, allocatable :: I_planeNodeID(:)
integer(kind=int32), public, allocatable :: I_planeElementID(:)
integer(kind=int32), public, allocatable :: II_planeNodeID(:)
integer(kind=int32), public, allocatable :: II_planeElementID(:)
integer(kind=int32), public :: A_PointNodeID
integer(kind=int32), public :: B_PointNodeID
integer(kind=int32), public :: C_PointNodeID
integer(kind=int32), public :: D_PointNodeID
integer(kind=int32), public :: A_PointElementID
integer(kind=int32), public :: B_PointElementID
integer(kind=int32), public :: C_PointElementID
integer(kind=int32), public :: D_PointElementID
integer(kind=int32), public :: xnum = 10
integer(kind=int32), public :: ynum = 10
integer(kind=int32), public :: znum = 10
real(kind=real64), public :: V_cmax = 100.0d0
real(kind=real64), public :: V_omax = 100.0d0
real(kind=real64), public :: CO2 = 380.0d0
real(kind=real64), public :: O2 = 202000.0d0
real(kind=real64), public :: R_d = 1.0d0
real(kind=real64), public :: K_c = 272.380d0
real(kind=real64), public :: K_o = 165820.0d0
real(kind=real64), public :: J_ = 0.0d0
real(kind=real64), public :: I_ = 0.0d0
real(kind=real64), public :: phi = 0.0d0
real(kind=real64), public :: J_max = 180.0d0
real(kind=real64), public :: theta_r = 0.0d0
real(kind=real64), public :: maxPPFD = 1000.0d0
real(kind=real64), public :: Lambda = 37.430d0
real(kind=real64), public :: temp = 303.0d0
real(kind=real64), public, allocatable :: DryDensity(:)
real(kind=real64), public, allocatable :: WaterContent(:)
real(kind=real64), public, allocatable :: YoungModulus(:)
real(kind=real64), public, allocatable :: PoissonRatio(:)
real(kind=real64), public, allocatable :: Density(:)
real(kind=real64), public, allocatable :: CarbonDiffusionCoefficient(:)
real(kind=real64), public, allocatable :: Stress(:,:,:)
real(kind=real64), public, allocatable :: Displacement(:,:)
real(kind=real64), public, allocatable :: BoundaryTractionForce(:,:)
real(kind=real64), public, allocatable :: BoundaryDisplacement(:,:)
real(kind=real64), public :: my_time = 0.0d0
real(kind=real64), public :: initial_width = 0.0010d0
real(kind=real64), public :: initial_length = 0.0010d0
real(kind=real64), public :: final_width = 0.060d0
real(kind=real64), public :: final_length = 0.100d0
real(kind=real64), public :: width_growth_ratio = 1.0d0/4.0d0
real(kind=real64), public :: length_growth_ratio = 1.0d0/4.0d0
real(kind=real64), public :: default_CarbonDiffusionCoefficient = 0.0010d0

Type-Bound Procedures

procedure, public :: Init => initLeaf
procedure, public :: change_length_or_width => change_length_or_width_Leaf
procedure, public :: rotate => rotateleaf
procedure, public :: move => moveleaf
procedure, public :: curve => curveleaf
procedure, public :: create => createLeaf
procedure, public, pass :: connectLeafLeaf => connectleafleaf
procedure, public, pass :: connectLeafStem
generic, public :: connect => connectLeafLeaf, connectLeafStem
procedure, public :: photosynthesis => photosynthesisLeaf
procedure, public :: getPhotosynthesisSpeedPerVolume => getPhotosynthesisSpeedPerVolumeLeaf
procedure, public :: rescale => rescaleleaf
procedure, public :: adjust => adjustLeaf
procedure, public :: resize => resizeleaf
procedure, public :: empty => emptyLeaf
procedure, public :: getVolume => getVolumeLeaf
procedure, public :: getLength => getLengthLeaf
procedure, public :: getBiomass => getBiomassLeaf
procedure, public :: getCoordinate => getCoordinateleaf
procedure, public :: getLeafArea => getLeafAreaLeaf
procedure, public :: getRadius => getRadiusLeaf
procedure, public :: getCenter => getCenterLeaf
procedure, public :: getNormalVector => getNormalVectorLeaf
procedure, public :: FullyExpanded => FullyExpandedLeaf
procedure, public :: gmsh => gmshleaf
procedure, public :: msh => mshleaf
procedure, public :: vtk => vtkleaf
procedure, public :: stl => stlleaf
procedure, public :: ply => plyleaf
procedure, public :: sync => syncleaf
procedure, public :: nn => nnLeaf
procedure, public :: ne => neLeaf
procedure, public :: remove => removeLeaf

Functions

public function getCoordinateleaf(obj, nodetype) result(ret)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in) :: nodetype

Return Value real(kind=real64), allocatable, (:)

public function getLengthLeaf(obj) result(Length)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout), optional :: obj

Return Value real(kind=real64)

public function FullyExpandedLeaf(obj, threshold) result(ret_expanded)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout), optional :: obj
real(kind=real64), intent(in) :: threshold

Return Value logical

public function getPhotosynthesisSpeedPerVolumeLeaf(obj, dt, air) result(Speed_PV)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in) :: dt
type(Air_), intent(in) :: air

Return Value real(kind=real64), allocatable, (:)

public function getVolumeLeaf(obj) result(ret)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: obj

Return Value real(kind=real64)

public function getBiomassLeaf(obj) result(ret)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: obj

Return Value real(kind=real64)

public function emptyLeaf(obj) result(leaf_is_empty)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: obj

Return Value logical

public function getLeafAreaLeaf(obj) result(LeafArea)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: obj

Return Value real(kind=real64)

public pure function getRadiusLeaf(obj) result(radius)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: obj

Return Value real(kind=real64)

public pure function getCenterLeaf(obj) result(center)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: obj

Return Value real(kind=real64), (3)

public function getNormalVectorLeaf(obj, ElementID) result(ret)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
integer(kind=int32), intent(in) :: ElementID

Return Value real(kind=real64), allocatable, (:)

public function nnLeaf(this) result(ret)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: this

Return Value integer(kind=int32)

public function neLeaf(this) result(ret)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(in) :: this

Return Value integer(kind=int32)

public function append_leaf_object_vector(arg1, arg2) result(ret)

Arguments

Type IntentOptional Attributes Name
type(Leaf_), intent(in), allocatable :: arg1(:)
type(Leaf_), intent(in), allocatable :: arg2(:)

Return Value type(Leaf_), allocatable, (:)


Subroutines

public subroutine createLeaf(obj, SurfacePoints, filename, x_num, y_num, x_len, y_len)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in), optional :: SurfacePoints(:,:)
character(len=*), intent(in), optional :: filename
integer(kind=int32), intent(in), optional :: x_num
integer(kind=int32), intent(in), optional :: y_num
real(kind=real64), intent(in), optional :: x_len
real(kind=real64), intent(in), optional :: y_len

public subroutine initLeaf(obj, config, regacy, Thickness, length, width, ShapeFactor, MaxThickness, Maxlength, Maxwidth, rotx, roty, rotz, location, species, SoyWidthRatio, curvature, x_num, y_num, z_num)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in), optional :: config
logical, intent(in), optional :: regacy
real(kind=real64), intent(in), optional :: Thickness
real(kind=real64), intent(in), optional :: length
real(kind=real64), intent(in), optional :: width
real(kind=real64), intent(in), optional :: ShapeFactor
real(kind=real64), intent(in), optional :: MaxThickness
real(kind=real64), intent(in), optional :: Maxlength
real(kind=real64), intent(in), optional :: Maxwidth
real(kind=real64), intent(in), optional :: rotx
real(kind=real64), intent(in), optional :: roty
real(kind=real64), intent(in), optional :: rotz
real(kind=real64), intent(in), optional :: location(3)
integer(kind=int32), intent(in), optional :: species
real(kind=real64), intent(in), optional :: SoyWidthRatio
real(kind=real64), intent(in), optional :: curvature
integer(kind=int32), intent(in), optional :: x_num
integer(kind=int32), intent(in), optional :: y_num
integer(kind=int32), intent(in), optional :: z_num

public subroutine curveleaf(obj, curvature)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in) :: curvature

public recursive subroutine rotateleaf(obj, x, y, z, reset)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in), optional :: x
real(kind=real64), intent(in), optional :: y
real(kind=real64), intent(in), optional :: z
logical, intent(in), optional :: reset

public recursive subroutine moveleaf(obj, x, y, z, reset)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in), optional :: x
real(kind=real64), intent(in), optional :: y
real(kind=real64), intent(in), optional :: z
logical, intent(in), optional :: reset

public subroutine connectleafleaf(obj, direct, leaf)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=2), intent(in) :: direct
class(Leaf_), intent(inout) :: leaf

public subroutine connectLeafStem(obj, direct, stem)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=2), intent(in) :: direct
class(Stem_), intent(inout) :: stem

public subroutine gmshleaf(obj, name)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in) :: name

public subroutine mshleaf(obj, name)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in) :: name

public subroutine vtkleaf(obj, name, field_name)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in) :: name
character(len=*), intent(in), optional :: field_name

public subroutine stlleaf(obj, name)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in) :: name

public subroutine plyleaf(obj, name)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
character(len=*), intent(in) :: name

public subroutine resizeleaf(obj, x, y, z, Length, Width)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout), optional :: obj
real(kind=real64), intent(in), optional :: x
real(kind=real64), intent(in), optional :: y
real(kind=real64), intent(in), optional :: z
real(kind=real64), intent(in), optional :: Length
real(kind=real64), intent(in), optional :: Width

public subroutine rescaleleaf(obj, x, y, z)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout), optional :: obj
real(kind=real64), intent(in), optional :: x
real(kind=real64), intent(in), optional :: y
real(kind=real64), intent(in), optional :: z

public subroutine photosynthesisLeaf(obj, dt, air)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in) :: dt
type(Air_), intent(in) :: air

public subroutine adjustLeaf(obj, width)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
real(kind=real64), intent(in) :: width(:,:)

public subroutine syncleaf(obj, from, mpid)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: obj
integer(kind=int32), intent(in) :: from
type(MPI_), intent(inout) :: mpid

public subroutine syncLeafVector(obj, from, mpid)

Arguments

Type IntentOptional Attributes Name
type(Leaf_), intent(inout), allocatable :: obj(:)
integer(kind=int32), intent(in) :: from
type(MPI_), intent(inout) :: mpid

public subroutine change_length_or_width_Leaf(this, dt)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: this
real(kind=real64), intent(in) :: dt

public subroutine removeLeaf(this)

Arguments

Type IntentOptional Attributes Name
class(Leaf_), intent(inout) :: this